SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2.

Eales, O, Page, A., de Oliveira Martins, L, Wang, H, Bodinier, B, Haw, D, Jonnerby, J, Atchison, C, Robson, S., Connor, T., Loman, N., Golubchik, T, Nunez, R., Bonsall, D, Rambaut, A, Snell, L., Livett, R, Ludden, C, Corden, S, Nastouli, E, Nebbia, G, Johnston, I, Lythgoe, K, Torok, M., Goodfellow, I., Prieto, J., Saeed, K, Jackson, D., Houlihan, C, Frampton, D, Hamilton, W., Witney, A., Bucca, G, Pope, C., Moore, C, Thomson, E., Harrison, E., Smith, C., Rogan, F, Beckwith, S., Murray, A, Singleton, D, Eastick, K, Sheridan, L., Randell, P, Jackson, L., Ariani, C., Gonçalves, S, Fairley, D., Loose, M., Watkins, J, Moses, S, Nicholls, S, Bull, M, Amato, R, Smith, D., Aanensen, D., Barrett, J., Aggarwal, D, Shepherd, J., Curran, M., Parmar, S, Parker, M., Williams, C, Glaysher, S, Underwood, A., Bashton, M, Pacchiarini, N, Loveson, K., Byott, M, Carabelli, A., Templeton, K., de Silva, T., Wang, D, Langford, C., Sillitoe, J, Gunson, R., Cottrell, S, O’Grady, J, Kwiatkowski, D, Lillie, P., Cortes, N, Moore, N, Thomas, C, Burns, P., Mahungu, T., Liggett, S, Beckett, A., Holden, M., Levett, L., Osman, H, Hassan-Ibrahim, M., Simpson, D., Chand, M, Gupta, R., Darby, A., Paterson, S, Pybus, O., Volz, E., de Angelis, D, Robertson, D., Martincorena, I, Aigrain, L, Bassett, A., Wong, N, Taha, Y, Erkiert, M., Chapman, M., Dewar, R, McHugh, M., Mookerjee, S, Aplin, S, Harvey, M, Sass, T, Umpleby, H, Wheeler, H, McKenna, J., Warne, B, Taylor, J., Chaudhry, Y, Izuagbe, R, Jahun, A., Young, G., McMurray, C, McCann, C., Nelson, A, Elliott, S, Lowe, H, Price, A, Crown, M., Rey, S, Roy, S, Temperton, B, Shaaban, S, Hesketh, A., Laing, K., Monahan, I., Heaney, J, Pelosi, E, Silviera, S, Wilson-Davies, E, Fryer, H, Adams, H, du Plessis, L, Johnson, R, Harvey, W., Hughes, J, Orton, R., Spurgin, L., Bourgeois, Y, Ruis, C, O’Toole, Á, Gourtovaia, M, Sanderson, T, Fraser, C, Edgeworth, J, Breuer, J, Michell, S., Todd, J., John, M, Buck, D, Gajee, K, Kay, G., Peacock, S., Heyburn, D, Kitchman, K, McNally, A, Pritchard, D., Dervisevic, S, Muir, P, Robinson, E, Vipond, B., Ramadan, N., Jeanes, C, Weldon, D, Catalan, J, Jones, N, da Silva Filipe, A, Williams, C, Fuchs, M, Miskelly, J, Jeffries, A., Oliver, K, Park, N., Ash, A, Koshy, C, Barrow, M, Buchan, S., Mantzouratou, A, Clark, G, Holmes, C., Campbell, S, Davis, T, Tan, N., Brown, J., Harris, K., Kidd, S., Grant, P., Xu-McCrae, L, Cox, A, Madona, P, Pond, M, Randell, P., Withell, K., Williams, C, Graham, C, Denton-Smith, R, Swindells, E, Turnbull, R, Sloan, T., Bosworth, A, Hutchings, S, Pymont, H., Casey, A, Ratcliffe, L, Jones, C., Knight, B., Haque, T, Hart, J, Irish-Tavares, D, Witele, E, Mower, C, Watson, L., Collins, J, Eltringham, G, Crudgington, D, Macklin, B, Iturriza-Gomara, M, Lucaci, A., McClure, P., Carlile, M, Holmes, N, Moore, C, Storey, N, Rooke, S, Yebra, G, Craine, N, Perry, M, Alikhan, N - F, Bridgett, S, Cook, K., Fearn, C, Goudarzi, S, Lyons, R., Williams, T, Haldenby, S., Durham, J, Leonard, S, Davies, R., Batra, R, Blane, B, Spyer, M., Smith, P, Yavus, M, Williams, R., Mahanama, A., Samaraweera, B, Girgis, S., Hansford, S., Green, A, Beaver, C, Bellis, K., Dorman, M., Kay, S, Prestwood, L, Rajatileka, S, Quick, J, Poplawski, R, Reynolds, N, Mack, A, Morriss, A, Whalley, T, Patel, B, Georgana, I, Hosmillo, M, Pinckert, M., Stockton, J, Henderson, J., Hollis, A, Stanley, W, Yew, W., Myers, R, Thornton, A, Adams, A, Annett, T, Asad, H, Birchley, A, Coombes, J, Evans, J., Fina, L, Gatica-Wilcox, B, Gilbert, L, Graham, L, Hey, J, Hilvers, E, Jones, S, Jones, H, Kumziene-Summerhayes, S, McKerr, C, Powell, J, Pugh, G, Taylor, S, Trotter, A., Williams, C., Kermack, L., Foulkes, B., Gallis, M, Hornsby, H., Louka, S., Pohare, M, Wolverson, P, Zhang, P, MacIntyre-Cockett, G, Trebes, A, Moll, R., Ferguson, L, Goldstein, E., Maclean, A, Tomb, R, Starinskij, I, Thomson, L, Southgate, J, Kraemer, M., Raghwani, J, Zarebski, A., Boyd, O, Geidelberg, L, Illingworth, C., Jackson, C, Pascall, D, Vattipally, S, Freeman, T., Hsu, S., Lindsey, B., James, K, Lewis, K, Tonkin-Hill, G, Tovar-Corona, J., Cox, M., Abudahab, K, Menegazzo, M, MEng, B., Yeats, C., Mukaddas, A, Wright, D., Colquhoun, R, Hill, V, Jackson, B, McCrone, J., Medd, N, Scher, E, Keatley, J - P, Curran, T, Morgan, S, Maxwell, P, Smith, K, Eldirdiri, S, Kenyon, A, Holmes, A., Price, J., Wyatt, T, Mather, A., Skvortsov, T, Hartley, J., Guest, M, Kitchen, C, Merrick, I, Munn, R, Bertolusso, B, Lynch, J, Vernet, G, Kirk, S, Wastnedge, E, Stanley, R, Idle, G, Bradley, D., Poyner, J, Mori, M, Jones, O, Wright, V, Brooks, E, Churcher, C., Fragakis, M, Galai, K, Jermy, A, Judges, S, McManus, G., Smith, K., Westwick, E, Attwood, S., Bolt, F, Davies, A, De Lacy, E, Downing, F, Edwards, S, Meadows, L, Jeremiah, S, Smith, N, Foulser, L, Charalampous, T, Patel, A, Berry, L, Boswell, T, Fleming, V., Howson-Wells, H., Joseph, A, Khakh, M, Lister, M., Bird, P., Fallon, K, Helmer, T, McMurray, C., Odedra, M, Shaw, J, Tang, J., Willford, N., Blakey, V, Raviprakash, V, Sheriff, N, Williams, L - A, Feltwell, T, Bedford, L, Cargill, J., Hughes, W, Moore, J, Stonehouse, S, Atkinson, L, Lee, J., Shah, D, Alcolea-Medina, A, Ohemeng-Kumi, N, Ramble, J, Sehmi, J, Williams, R, Chatterton, W, Pusok, M, Everson, W, Castigador, A, Macnaughton, E, Bouzidi, K., Lampejo, T, Sudhanva, M, Breen, C, Sluga, G, Ahmad, S., George, R., Machin, N., Binns, D, James, V, Blacow, R, Coupland, L, Smith, L, Barton, E, Padgett, D, Scott, G, Cross, A, Mirfenderesky, M, Greenaway, J, Cole, K, Clarke, P, Duckworth, N, Walsh, S, Bicknell, K, Impey, R, Wyllie, S, Hopes, R, Bishop, C, Chalker, V, Harrison, I, Gifford, L, Molnar, Z, Auckland, C, Evans, C, Johnson, K, Partridge, D., Raza, M, Baker, P, Bonner, S, Essex, S, Murray, L., Lawton, A., Burton-Fanning, S, Payne, B., Waugh, S, Gomes, A., Kimuli, M, Murray, D., Ashfield, P, Dobie, D, Ashford, F, Best, A, Crawford, L, Cumley, N, Mayhew, M, Megram, O, Mirza, J, Moles-Garcia, E, Percival, B, Driscoll, M, Ensell, L, Lowe, H., Maftei, L, Mondani, M, Chaloner, N., Cogger, B., Easton, L., Huckson, H, Lewis, J, Lowdon, S, Malone, C., Munemo, F, Mutingwende, M, Nicodemi, R, Podplomyk, O, Somassa, T, Beggs, A, Richter, A, Cormie, C, Dias, J, Forrest, S, Higginson, E., Maes, M, Young, J, Davidson, R., Jackson, K., Turtle, L, Keeley, A., Ball, J, Byaruhanga, T, Chappell, J., Dey, J, Hill, J., Park, E., Fanaie, A, Hilson, R., Yaze, G, Lo, S, Afifi, S, Beer, R, Maksimovic, J, McCluggage, K, Spellman, K, Bresner, C, Fuller, W, Marchbank, A, Workman, T, Shelest, E, Debebe, J, Sang, F, Zamudio, M., Francois, S, Gutierrez, B, Vasylyeva, T., Flaviani, F, Ragonnet-Cronin, M, Smollett, K., Broos, A, Mair, D, Nichols, J, Nomikou, K, Tong, L, Tsatsani, I, O’Brien, P., Rushton, S, Sanderson, R, Perkins, J, Cotton, S, Gallagher, A, Allara, E, Pearson, C, Bibby, D, Dabrera, G, Ellaby, N, Gallagher, E, Hubb, J, Lackenby, A, Lee, D, Manesis, N, Mbisa, T, Platt, S, Twohig, K., Morgan, M, Aydin, A, Baker, D., Foster-Nyarko, E, Prosolek, S., Rudder, S, Baxter, C, Carvalho, S., Lavin, D, Mariappan, A, Radulescu, C, Singh, A, Tang, M, Morcrette, H, Bayzid, N, Cotic, M, Balcazar, C., Gallagher, M., Maloney, D, Stanton, T., Williamson, K., Manley, R, Michelsen, M., Sambles, C., Studholme, D., Warwick-Dugdale, J, Eccles, R, Gemmell, M, Gregory, R, Hughes, M, Nelson, C, Rainbow, L, Vamos, E., Webster, H., Whitehead, M, Wierzbicki, C, Angyal, A, Green, L., Whiteley, M, Betteridge, E, Bronner, I., Farr, B., Goodwin, S, Lensing, S., McCarthy, S., Quail, M., Rajan, D, Redshaw, N., Scott, C, Shirley, L, Thurston, S., Rowe, W, Gaskin, A, Le-Viet, T, Bonfield, J, Liddle, J, Whitwham, A, Ashby, D, Barclay, W, Taylor, G, Cooke, G, Ward, H, Darzi, A, Riley, S, Chadeau-Hyam, M, Donnelly, C., Elliott, P and The COVID-19 Genomics UK (COG-UK) Consortium, , 2022. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2. BMC Infectious Diseases, 22 (1), 647.

Full text available as:

Preview

PDF (OPEN ACCESS ARTICLE) s12879-022-07628-4 (1).pdf - Published Version Available under License Creative Commons Attribution. 7MB

Copyright to original material in this document is with the original owner(s). Access to this content through BURO is granted on condition that you use it only for research, scholarly or other non-commercial purposes. If you wish to use it for any other purposes, you must contact BU via BURO@bournemouth.ac.uk. Any third party copyright material in this document remains the property of its respective owner(s). BU grants no licence for further use of that third party material.

DOI: 10.1186/s12879-022-07628-4

Downloads