Genomic reconstruction of the SARS-CoV-2 epidemic in England.

Vöhringer, H., Sanderson, T, Sinnott, M, De Maio, N, Nguyen, T, Goater, R, Schwach, F, Harrison, I, Hellewell, J, Ariani, C., Gonçalves, S, Jackson, D., Johnston, I, Jung, A., Saint, C, Sillitoe, J, Suciu, M, Goldman, N, Panovska-Griffiths, J, Abnizova, I, Aigrain, L, Alderton, A, Ali, M, Allen, L, Amato, R, Anderson, R, Ariani, C, Austin-Guest, S, Bala, S, Barrett, J, Bassett, A, Battleday, K, Beal, J, Beale, M, Beaver, C, Bellany, S, Bellerby, T, Bellis, K, Berger, D, Berriman, M, Betteridge, E, Bevan, P, Binley, S, Bishop, J, Blackburn, K, Bonfield, J, Boughton, N, Bowker, S, Brendler-Spaeth, T, Bronner, I, Brooklyn, T, Buddenborg, S., Bush, R, Caetano, C, Cagan, A, Carter, N, Cartwright, J, Monteiro, T., Chapman, L, Chillingworth, T., Clapham, P, Clark, R, Clarke, A, Clarke, C, Cole, D, Cook, E, Coppola, M, Cornell, L, Cornwell, C, Corton, C, Crackett, A, Cranage, A, Craven, H, Craw, S, Crawford, M, Cutts, T, Dabrowska, M, Davies, M, Davies, R, Dawson, J, Day, C, Densem, A, 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Sizer, D, Skeldon, K, Skelton, J, Slater-Tunstill, J, Sloper, L, Smerdon, N, Smith, C, Smith, C, Smith, J, Smith, K, Smith, M, Smith, S, Smith, T, Sneade, L, Soria, C., Sousa, C, Souster, E, Sparkes, A, Spencer-Chapman, M, Squares, J, Stanley, R, Steed, C, Stickland, T, Still, I, Stratton, M., Strickland, M, Swann, A, Swiatkowska, A, Sycamore, N, Swift, E, Symons, E, Szluha, S, Taluy, E, Tao, N, Taylor, K, Taylor, S, Thompson, S, Thompson, M, Thomson, M, Thomson, N, Thurston, S, Tonkin-Hill, G, Toombs, D, Topping, B, Tovar-Corona, J, Ungureanu, D, Uphill, J, Urbanova, J, Van Vuuren, P., Vancollie, V, Voak, P, Walker, D, Walker, M, Waller, M, Ward, G, Weatherhogg, C, Webb, N, Weldon, D, Wells, A, Wells, E, Westwood, L, Whipp, T, Whiteley, T, Whitton, G, Whitwham, A, Widaa, S, Williams, M, Wilson, M, Wright, S, Robson, S., Connor, T., Loman, N., Golubchik, T, Martinez Nunez, R., Bonsall, D, Rambaut, A, Snell, L., Ludden, C, Corden, S, Nastouli, E, Nebbia, G, Lythgoe, K, Torok, M., Goodfellow, I., Prieto, J., Saeed, K, Houlihan, C, Frampton, D, Hamilton, W., Witney, A., Bucca, G, Pope, C., Moore, C, Thomson, E., Harrison, E., Smith, C., Rogan, F, Beckwith, S., Murray, A, Singleton, D, Eastick, K, Sheridan, L., Randell, P, Jackson, L., Gonçalves, S, Fairley, D., Loose, M., Watkins, J, Moses, S, Nicholls, S, Bull, M, Smith, D., Aanensen, D., Aggarwal, D, Shepherd, J., Curran, M., Parmar, S, Parker, M., Williams, C, Glaysher, S, Underwood, A., Bashton, M, Pacchiarini, N, Loveson, K., Byott, M, Carabelli, A., Templeton, K., de Silva, T., Wang, D, Langford, C., Gunson, R., Cottrell, S, O’Grady, J, Kwiatkowski, D, Lillie, P., Cortes, N, Moore, N, Thomas, C, Burns, P., Mahungu, T., Liggett, S, Beckett, A., Holden, M., Levett, L., Osman, H, Hassan-Ibrahim, M., Simpson, D., Chand, M, Gupta, R., Darby, A., Paterson, S, Pybus, O., Volz, E., de Angelis, D, Robertson, D., Page, A., Bassett, A., Wong, N, Taha, Y, Erkiert, M., Spencer Chapman, M., Dewar, R, McHugh, M., 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Coombes, J, Evans, J., Fina, L, Gatica-Wilcox, B, Gilbert, L, Graham, L, Hey, J, Hilvers, E, Jones, S, Jones, H, Kumziene-Summerhayes, S, McKerr, C, Powell, J, Pugh, G, Taylor, S, Trotter, A., Williams, C., Kermack, L., Foulkes, B., Gallis, M, Hornsby, H., Louka, S., Pohare, M, Wolverson, P, Zhang, P, MacIntyre-Cockett, G, Trebes, A, Moll, R., Ferguson, L, Goldstein, E., Maclean, A, Tomb, R, Starinskij, I, Thomson, L, Southgate, J, Kraemer, M., Raghwani, J, Zarebski, A., Boyd, O, Geidelberg, L, Illingworth, C., Jackson, C, Pascall, D, Vattipally, S, Freeman, T., Hsu, S., Lindsey, B., Tovar-Corona, J., Cox, M., Abudahab, K, Menegazzo, M, Taylor, B., Yeats, C., Mukaddas, A, Wright, D., de Oliveira Martins, L, Colquhoun, R, Hill, V, Jackson, B, McCrone, J., Medd, N, Scher, E, Keatley, J., Curran, T, Morgan, S, Maxwell, P, Smith, K, Eldirdiri, S, Kenyon, A, Holmes, A., Price, J., Wyatt, T, Mather, A., Skvortsov, T, Hartley, J., Guest, M, Kitchen, C, Merrick, I, Munn, R, Bertolusso, B, 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Quail, M., Redshaw, N., Thurston, S., Rowe, W, Gaskin, A, Le-Viet, T, Liddle, J, Birney, E, Volz, E, Funk, S, Kwiatkowski, D, Chand, M, Martincorena, I, Barrett, J. and Gerstung, M, 2021. Genomic reconstruction of the SARS-CoV-2 epidemic in England. Nature, 600 (7889), 506-511.

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DOI: 10.1038/s41586-021-04069-y

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